Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC0750(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC0750
|Gene||Common Name||Description||Module membership|
|CAC0009||CAC0009||Uncharacterized conserved protein, ortholog of YRXA B.subtilis (NCBI ptt file)||62, 312|
|CAC0134||CAC0134||Hypothetical protein, CF-19 family (NCBI ptt file)||62, 247|
|CAC0146||CAC0146||Related to ABC transporter permease component (NCBI ptt file)||62, 142|
|CAC0147||CAC0147||ABC transporter, ATP-binding protein (NCBI ptt file)||62, 142|
|CAC0154||MtlA||PTS system, mannitol-specific IIBC component (gene MtlA) (NCBI ptt file)||301, 342|
|CAC0155||MtlR||Putative regulator of the PTS system for mannitol (gene MltR) (NCBI ptt file)||170, 342|
|CAC0156||MltF||PTS system, mannitol-specific IIA domain (Ntr-type) (gene MltF) (NCBI ptt file)||170, 342|
|CAC0157||MtlD||Possible sigma factor, diverged member of sigF/sigE/sigG family (NCBI ptt file)||170, 342|
|CAC0205||CAC0205||Predicted phosphohydrolases, Icc family (NCBI ptt file)||62, 279|
|CAC0221||CAC0221||Aspartate aminotransferase (NCBI ptt file)||342, 343|
|CAC0319||CAC0319||ABC transporter ATP-binding protein (NCBI ptt file)||6, 342|
|CAC0320||CAC0320||Predicted permease (NCBI ptt file)||338, 342|
|CAC0440||CAC0440||Homolog of osmotically induced OSMY protein of E.coli (NCBI ptt file)||62, 207|
|CAC0444||napA||Na/H antiporter (napA) (NCBI ptt file)||62, 174|
|CAC0738||CAC0738||DNA polymerase III epsilon subunit (3'-5' exonuclease) containing BRCT domain (NCBI ptt file)||62, 142|
|CAC0750||CAC0750||Hypothetical protein (NCBI ptt file)||62, 342|
|CAC0779||CAC0779||Amidase related to nicotinamidase (NCBI ptt file)||39, 62|
|CAC0795||CAC0795||Glycosyltransferase involved in cell wall biogenesis (NCBI ptt file)||288, 342|
|CAC0934||CAC0934||Hypothetical protein (NCBI ptt file)||62, 177|
|CAC1019||CAC1019||Phospholipase C related protein (NCBI ptt file)||62, 80|
|CAC1141||CAC1141||Hypothetical protein (NCBI ptt file)||16, 342|
|CAC1238||CAC1238||Hypothetical protein (NCBI ptt file)||62, 348|
|CAC1321||glpK||Glycerol kinase, GLPK (NCBI ptt file)||272, 342|
|CAC1463||CAC1463||Predicted transcriptional regulator (NCBI ptt file)||145, 342|
|CAC1646||CAC1646||Hypothetical protein, CF-7 family (NCBI ptt file)||148, 342|
|CAC1860||CAC1860||Predicted flavodoxin oxidoreductase (NCBI ptt file)||62, 312|
|CAC1867||CAC1867||Transcriptional regulator (phage-related) (Xre family) (NCBI ptt file)||301, 342|
|CAC1870||CAC1870||Hypothetical protein (NCBI ptt file)||44, 342|
|CAC1871||CAC1871||FtsK-like DNA segregation ATPase, YDCQ B.subtilis ortholog (NCBI ptt file)||332, 342|
|CAC1872||repB||Replication initiation protein REP (NCBI ptt file)||54, 342|
|CAC1901||CAC1901||Hypothetical protein (NCBI ptt file)||54, 342|
|CAC1942||CAC1942||Hypothetical protein (NCBI ptt file)||54, 342|
|CAC2431||CAC2431||Alkaline phosphatase superfamily enzyme (NCBI ptt file)||62, 312|
|CAC2682||CAC2682||Hypothetical protein (NCBI ptt file)||62, 300|
|CAC2683||cotF||Related to spore coat protein F (NCBI ptt file)||62, 300|
|CAC2776||CAC2776||Hypothetical protein (NCBI ptt file)||62, 102|
|CAC2781||CAC2781||Hypothetical protein (NCBI ptt file)||62, 345|
|CAC2938||CAC2938||Hypothetical protein (NCBI ptt file)||5, 62|
|CAC2955||lacR||Lactose phosphotransferase system repressor lacR (NCBI ptt file)||288, 342|
|CAC2964||lacE||PTS system lactose-specific enzyme IIBC (NCBI ptt file)||288, 342|
|CAC3168||CAC3168||Predicted membrane protein (NCBI ptt file)||62, 344|
|CAC3232||CAC3232||Hypothetical protein (NCBI ptt file)||62, 247|
|CAC3243||CAC3243||Membrane associated methyl-accepting chemotaxis protein (NCBI ptt file)||113, 342|
|CAC3379||CAC3379||Uncharacterized protein, YQFW B.subtilis homolog (NCBI ptt file)||62, 361|
|CAC3392||CAC3392||NADH-dependent butanol dehydrogenase (NCBI ptt file)||62, 91|
|CAC3504||CAC3504||Transcriptional regulator, AcrR family (NCBI ptt file)||62, 235|
|CAC3601||CAC3601||Nudix (MutT) family hydrolase (NCBI ptt file)||62, 259|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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