Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2776(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC2776
|Gene||Common Name||Description||Module membership|
|CAC0009||CAC0009||Uncharacterized conserved protein, ortholog of YRXA B.subtilis (NCBI ptt file)||62, 312|
|CAC0036||CAC0036||Predicted membrane protein, containing FHA domain (NCBI ptt file)||102, 183|
|CAC0045||CAC0045||TPR-repeat-containing protein (NCBI ptt file)||102, 264|
|CAC0134||CAC0134||Hypothetical protein, CF-19 family (NCBI ptt file)||62, 247|
|CAC0146||CAC0146||Related to ABC transporter permease component (NCBI ptt file)||62, 142|
|CAC0147||CAC0147||ABC transporter, ATP-binding protein (NCBI ptt file)||62, 142|
|CAC0205||CAC0205||Predicted phosphohydrolases, Icc family (NCBI ptt file)||62, 279|
|CAC0249||CAC0249||Glyoxalase I (glyoxalase family) (NCBI ptt file)||102, 332|
|CAC0440||CAC0440||Homolog of osmotically induced OSMY protein of E.coli (NCBI ptt file)||62, 207|
|CAC0444||napA||Na/H antiporter (napA) (NCBI ptt file)||62, 174|
|CAC0511||CAC0511||Predicted P-loop containing kinase, similar to B.subtilis yvcJ (NCBI ptt file)||102, 291|
|CAC0530||CAC0530||Hypothetical protein (NCBI ptt file)||102, 353|
|CAC0573||CAC0573||Uncharacterized protein, homolog YvqG B.subtilis (NCBI ptt file)||102, 251|
|CAC0578||metH||Cobalamine-dependent methionine synthase I (methyltransferase and cobalamine-binding domain) (NCBI ptt file)||102, 146|
|CAC0738||CAC0738||DNA polymerase III epsilon subunit (3'-5' exonuclease) containing BRCT domain (NCBI ptt file)||62, 142|
|CAC0750||CAC0750||Hypothetical protein (NCBI ptt file)||62, 342|
|CAC0779||CAC0779||Amidase related to nicotinamidase (NCBI ptt file)||39, 62|
|CAC0934||CAC0934||Hypothetical protein (NCBI ptt file)||62, 177|
|CAC0984||CAC0984||ABC transporter, ATP-binding protein (NCBI ptt file)||102, 146|
|CAC1019||CAC1019||Phospholipase C related protein (NCBI ptt file)||62, 80|
|CAC1077||CAC1077||Putative translation initiation inhibitor (NCBI ptt file)||102, 179|
|CAC1238||CAC1238||Hypothetical protein (NCBI ptt file)||62, 348|
|CAC1350||CAC1350||Hypothetical protein (NCBI ptt file)||102, 190|
|CAC1645||CAC1645||Ankyrin repeats containing protein (NCBI ptt file)||69, 102|
|CAC1784||smf||DNA uptake protein (NCBI ptt file)||39, 102|
|CAC1846||motA||Flagellar motor component MotA (NCBI ptt file)||102, 123|
|CAC1860||CAC1860||Predicted flavodoxin oxidoreductase (NCBI ptt file)||62, 312|
|CAC1956||CAC1956||Site-specific recombinases, DNA invertase Pin homolog (NCBI ptt file)||102, 312|
|CAC2057||CAC2057||D-alanyl-D-alanine carboxypeptidase (NCBI ptt file)||102, 207|
|CAC2291||CAC2291||Hypothetical protein (NCBI ptt file)||86, 102|
|CAC2402||CAC2402||TPR repeats containing protein (NCBI ptt file)||69, 102|
|CAC2431||CAC2431||Alkaline phosphatase superfamily enzyme (NCBI ptt file)||62, 312|
|CAC2506||CAC2506||SpoIID-like domain containing protein; peptidoglycan-binding domain (NCBI ptt file)||102, 190|
|CAC2636||CAC2636||Predicted GTPase, YSXC B.subtilis ortholog (NCBI ptt file)||102, 123|
|CAC2682||CAC2682||Hypothetical protein (NCBI ptt file)||62, 300|
|CAC2683||cotF||Related to spore coat protein F (NCBI ptt file)||62, 300|
|CAC2720||CAC2720||Sensory protein containing histidine kinase, PAS anf GAF domains (NCBI ptt file)||102, 123|
|CAC2756||CAC2756||MDR-type ABC transporter (membrane associated ATPase) (NCBI ptt file)||102, 176|
|CAC2776||CAC2776||Hypothetical protein (NCBI ptt file)||62, 102|
|CAC2781||CAC2781||Hypothetical protein (NCBI ptt file)||62, 345|
|CAC2863||CAC2863||Predicted membrane protein (NCBI ptt file)||102, 279|
|CAC2938||CAC2938||Hypothetical protein (NCBI ptt file)||5, 62|
|CAC3168||CAC3168||Predicted membrane protein (NCBI ptt file)||62, 344|
|CAC3232||CAC3232||Hypothetical protein (NCBI ptt file)||62, 247|
|CAC3379||CAC3379||Uncharacterized protein, YQFW B.subtilis homolog (NCBI ptt file)||62, 361|
|CAC3392||CAC3392||NADH-dependent butanol dehydrogenase (NCBI ptt file)||62, 91|
|CAC3494||CAC3494||Transcription regulator, YOBV B.subtilis homolog (NCBI ptt file)||102, 344|
|CAC3504||CAC3504||Transcriptional regulator, AcrR family (NCBI ptt file)||62, 235|
|CAC3601||CAC3601||Nudix (MutT) family hydrolase (NCBI ptt file)||62, 259|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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