Organism : Clostridium acetobutylicum | Module List :
Hypothetical protein (NCBI ptt file)
Functional Annotations (1)
|Predicted transcriptional regulator||cog/ cog|
Regulation information for CAC1950(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC1950
|Predicted transcriptional regulator||cog/ cog|
Module neighborhood information for CAC1950
|Gene||Common Name||Description||Module membership|
|CAC0148||CAC0148||Predicted enzyme with TIM-barrel fold (NCBI ptt file)||117, 345|
|CAC0160||CAC0160||Predicted acetyltransferase (NCBI ptt file)||185, 345|
|CAC0177||appB||Oligopeptide transport permease protein (NCBI ptt file)||314, 345|
|CAC0248||CAC0248||Transposon related protein (NCBI ptt file)||13, 117|
|CAC0325||CAC0325||Uncharacterized membrane protein, homolog of YtaF B.subtilis (NCBI ptt file)||13, 117|
|CAC0352||CAC0352||Uncharacterized conserved membrane protein, SANA family (NCBI ptt file)||115, 345|
|CAC0583||CAC0583||CBIK protein (chain A, anaerobic cobalt chelatase) (NCBI ptt file)||117, 344|
|CAC0584||CAC0584||Precorrin-6B methylase 1 CobL1/CbiE (NCBI ptt file)||106, 117|
|CAC0746||CAC0746||Secreted protease metal-dependent protease (NCBI ptt file)||269, 345|
|CAC0994||CAC0994||Predicted membrane protein (NCBI ptt file)||100, 345|
|CAC0995||CAC0995||Predicted membrane protein (NCBI ptt file)||80, 345|
|CAC1049||CAC1049||Uncharacterized conserved protein,ortholog of YaaR B.subtilis (NCBI ptt file)||117, 158|
|CAC1160||CAC1160||Hypothetical protein (NCBI ptt file)||25, 345|
|CAC1266||CAC1266||Pseudouridylate synthase family protein, yabo B.subtilis ortholog (NCBI ptt file)||67, 345|
|CAC1317||CAC1317||Potassium channel subunit (NCBI ptt file)||117, 344|
|CAC1450||CAC1450||Predicted alpha/beta superfamily hydrolase (NCBI ptt file)||294, 345|
|CAC1528||CAC1528||Predicted membrane protein (NCBI ptt file)||117, 336|
|CAC1543||CAC1543||Lactate dehydrogenase (NCBI ptt file)||117, 265|
|CAC1592||CAC1592||Predicted permease, YCGR B.subtilis ortholog (NCBI ptt file)||69, 345|
|CAC1614||CAC1614||Predicted glycosyltransferase (NCBI ptt file)||69, 117|
|CAC1791||CAC1791||Undecaprenyl pyrophosphate synthase (NCBI ptt file)||282, 345|
|CAC1911||CAC1911||Hypothetical protein (NCBI ptt file)||117, 345|
|CAC1921||CAC1921||Hypothetical protein (NCBI ptt file)||54, 117|
|CAC1922||CAC1922||Hypothetical protein (NCBI ptt file)||117, 246|
|CAC1948||CAC1948||Hypothetical protein (NCBI ptt file)||117, 261|
|CAC1949||CAC1949||Possible TPR-repeat contaning protein (NCBI ptt file)||117, 261|
|CAC1950||CAC1950||Hypothetical protein (NCBI ptt file)||117, 345|
|CAC2055||CAC2055||Predicted transcriptional regulator (NCBI ptt file)||158, 345|
|CAC2168||CAC2168||Uncharacterized conserved protein (NCBI ptt file)||258, 345|
|CAC2287||CAC2287||Acyl-CoA reductase LuxC (NCBI ptt file)||73, 345|
|CAC2298||CAC2298||Predicted nucleotidyltransferase (NCBI ptt file)||91, 345|
|CAC2301||mrcB||Membrane carboxypeptidase mrcB (NCBI ptt file)||239, 345|
|CAC2343||CAC2343||LPS biosynthesis O-acetyl transferase (NCBI ptt file)||100, 345|
|CAC2414||CAC2414||Uncharacterized conserved protein, related to alpha-amylase/alpha-mannosidase (NCBI ptt file)||283, 345|
|CAC2418||CAC2418||Uncharacterized conserved membrane protein (NCBI ptt file)||117, 158|
|CAC2608||CAC2608||Trancriptional regulator of AraC family (NCBI ptt file)||117, 158|
|CAC2660||pykA||Pyruvate carboxylase, PYKA (NCBI ptt file)||29, 345|
|CAC2687||recQ||RecQ protein, superfamily II DNA helicase (NCBI ptt file)||113, 345|
|CAC2694||CAC2694||Hypothetical protein (NCBI ptt file)||158, 345|
|CAC2696||CAC2696||Predicted membrane protein (NCBI ptt file)||117, 346|
|CAC2781||CAC2781||Hypothetical protein (NCBI ptt file)||62, 345|
|CAC2907||CAC2907||Glycosyltransferase (NCBI ptt file)||13, 117|
|CAC2946||CAC2946||Hypothetical protein (NCBI ptt file)||345, 363|
|CAC2961||galT||Galactose-1-phosphate uridyltransferase (NCBI ptt file)||75, 345|
|CAC2988||CAC2988||Uncharacterized conserved protein, YABE B.subtilis ortholog (NCBI ptt file)||267, 345|
|CAC3228||CAC3228||Predicted membrane protein (NCBI ptt file)||5, 117|
|CAC3424||CAC3424||Transcriptional regulator, RpiR family (NCBI ptt file)||158, 345|
|CAC3611||CAC3611||Regulatory protein related to malT, positive regulator of mal regulon (ATPase and HTH-type DNA-binding domain) (NCBI ptt file)||117, 158|
|CAC3683||CAC3683||Penicillin-binding protein 2 (serine-type D-Ala-D-Ala carboxypeptidase) (NCBI ptt file)||117, 286|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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