Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1125(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC1125
|Gene||Common Name||Description||Module membership|
|CAC0080||agrC||Histidine kinase-like ATPase (NCBI ptt file)||137, 241|
|CAC0251||CAC0251||Uncharacterized Fe-S protein (fragment) (NCBI ptt file)||165, 212|
|CAC0252||CAC0252||Molybdate-binding protein (NCBI ptt file)||137, 148|
|CAC0317||CAC0317||Sensory transduction histidine kinase (NCBI ptt file)||137, 253|
|CAC0336||CAC0336||Hypothetical protein, CF-22 family (NCBI ptt file)||137, 163|
|CAC0358||CAC0358||Predicted xylanase/chitin deacetylase (NCBI ptt file)||165, 207|
|CAC0430||CAC0430||Glycerophosphoryl diester phosphodiesterase (NCBI ptt file)||165, 236|
|CAC0485||CAC0485||TRNA-processing ribonuclease BN (NCBI ptt file)||137, 258|
|CAC0560||CAC0560||Integral membrane protein similar to antibiotic resistance protein B.subtilis (NCBI ptt file)||83, 165|
|CAC0703||CAC0703||Sugar ABC-transporter, ATP-ase component (NCBI ptt file)||95, 137|
|CAC0753||CAC0753||PolyA polymerase related protein (HD hydrolase) and P-loop ATP-ase domain (NCBI ptt file)||137, 353|
|CAC0754||CAC0754||Hypothetical protein (NCBI ptt file)||165, 353|
|CAC0839||potB||ABC-type spermidine/putrescine transport system, permease component I (NCBI ptt file)||137, 153|
|CAC0873||xpt||Xanthine phosphoribosyltransferase (NCBI ptt file)||34, 165|
|CAC1054||CAC1054||Arginase (NCBI ptt file)||165, 236|
|CAC1125||CAC1125||Hypothetical protein (NCBI ptt file)||137, 165|
|CAC1143||recD||Exodeoxyribonuclease V, Alpha subunit, RecD (NCBI ptt file)||165, 361|
|CAC1194||CAC1194||Hypothetical protein (NCBI ptt file)||137, 253|
|CAC1284||prmA||SAM-dependent methyltransferase (NCBI ptt file)||47, 137|
|CAC1327||CAC1327||Hypothetical protein (NCBI ptt file)||165, 202|
|CAC1352||CAC1352||Membrane associated chemotaxis sensory transducer protein (MSP domain and HAMP domain) (NCBI ptt file)||137, 256|
|CAC1465||CAC1465||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||137, 313|
|CAC1496||CAC1496||Uncharacterized protein, homolog of YCGL B.subtilis (NCBI ptt file)||71, 137|
|CAC1536||CAC1536||Transcriptional regulator, AcrR family (NCBI ptt file)||150, 165|
|CAC1556||CAC1556||Chitinase family protein (NCBI ptt file)||1, 165|
|CAC1607||CAC1607||Hypothetical protein (NCBI ptt file)||4, 137|
|CAC1631||CAC1631||Biotin synthase family enzyme (NCBI ptt file)||137, 241|
|CAC1845||motB||Flagellar motor protein MotB (NCBI ptt file)||123, 137|
|CAC2344||CAC2344||LPS biosynthesis protein , RfbU family (NCBI ptt file)||137, 159|
|CAC2350||CAC2350||Sugar transaminase, involved in dTDP-4-amino-4,6-dideoxyglucose biosynthesis (NCBI ptt file)||100, 137|
|CAC2400||CAC2400||Serine/threonine kinase related protein, inactivated (HRDL motif absent) (fragment) (NCBI ptt file)||69, 137|
|CAC2509||CAC2509||Predicted acetyltransferase (NCBI ptt file)||165, 301|
|CAC2690||CAC2690||Transcriptional regulator, LysR family (NCBI ptt file)||86, 137|
|CAC2822||CAC2822||TPR-repeat-containing protein (NCBI ptt file)||165, 301|
|CAC2874||CAC2874||UDP-N-acetylglucosamine 2-epimerase (NCBI ptt file)||137, 315|
|CAC2893||CAC2893||Hypothetical protein (NCBI ptt file)||63, 137|
|CAC2978||gatC||Glu-tRNA amidotransferase, subunit C (NCBI ptt file)||47, 137|
|CAC3257||CAC3257||Predicted membrane protein (NCBI ptt file)||137, 333|
|CAC3323||CAC3323||Predicted membrane protein (NCBI ptt file)||165, 202|
|CAC3344||CAC3344||Uncharacterized protein, homolog of hypothetical protein (GI:5918205) from Pseudomonas stutzeri (NCBI ptt file)||165, 236|
|CAC3493||CAC3493||Predicted transcriptional regulator component, YOBU B.subtilis homolog (NCBI ptt file)||137, 241|
|CAC3500||CAC3500||Anaerobic dicarboxylate transport protein (NCBI ptt file)||165, 361|
|CAC3555||CAC3555||Nitroreductase family protein (NCBI ptt file)||165, 218|
|CAC3659||CAC3659||S-adenosylmethionine-dependent methyltransferase (NCBI ptt file)||165, 265|
|CAC3669||CAC3669||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||65, 137|
|CAC3688||CAC3688||Membrane-associated methyl-accepting chemotaxis protein with HAMP domain (NCBI ptt file)||165, 236|
|CAC3726||CAC3726||Uncharacterized conserved membrane protein, YjeP/UPF0003 family (NCBI ptt file)||9, 165|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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