Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2397(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC2397
|Gene||Common Name||Description||Module membership|
|CAC0111||CAC0111||Glutamine-binding periplasmic protein fused to glutamine permease (NCBI ptt file)||106, 278|
|CAC0112||glnQ||Glutamine ABC transporter (ATP-binding protein) (NCBI ptt file)||106, 302|
|CAC0237||CAC0237||ABC transporter, permease component (NCBI ptt file)||106, 287|
|CAC0584||CAC0584||Precorrin-6B methylase 1 CobL1/CbiE (NCBI ptt file)||106, 117|
|CAC0617||CAC0617||Hypothetical protein, CF-25 family (NCBI ptt file)||58, 296|
|CAC0626||trpS||Tryptophan-tRNA synthetase, trpS (NCBI ptt file)||247, 296|
|CAC0768||CAC0768||Transcriptional regulator, LysR family (NCBI ptt file)||58, 296|
|CAC1041||argS||Arginyl-tRNA synthetase (NCBI ptt file)||147, 296|
|CAC1042||CAC1042||Predicted membrane protein (NCBI ptt file)||149, 296|
|CAC1235||thrB||Homoserine kinase (thrB) (NCBI ptt file)||58, 296|
|CAC1267||dacB||D-alanyl-D-alanine carboxypeptidase (NCBI ptt file)||218, 296|
|CAC1272||CAC1272||Predicted membrane protein (NCBI ptt file)||106, 215|
|CAC1279||hemN||Coproporphyrinogen III oxidase (NCBI ptt file)||3, 106|
|CAC1760||CAC1760||Signal peptidase I (NCBI ptt file)||106, 194|
|CAC1821||purB||Adenylosuccinate lyase (NCBI ptt file)||106, 297|
|CAC1852||CAC1852||Magnesium and cobalt transport protein (NCBI ptt file)||106, 346|
|CAC1858||CAC1858||MoxR-like ATPase (NCBI ptt file)||64, 106|
|CAC2253||CAC2253||Membrane-associated sensory histidine kinase-like ATPase (NCBI ptt file)||82, 106|
|CAC2265||CAC2265||Uncharacterized conserved membrane protein (NCBI ptt file)||106, 297|
|CAC2266||CAC2266||Uncharacterized conserved membrane protein (fragment) (NCBI ptt file)||106, 297|
|CAC2295||CAC2295||Uncharacterized conserved protein, YebC family (NCBI ptt file)||152, 296|
|CAC2367||CAC2367||Uncharacterized protein containing predicted cell adhesion domain and ChW-repeats (NCBI ptt file)||77, 296|
|CAC2370||CAC2370||Uncharacterized protein, YrfI family (NCBI ptt file)||106, 194|
|CAC2371||CAC2371||S-adenosylmethionine-dependent methyltransferase (NCBI ptt file)||106, 194|
|CAC2397||CAC2397||Hypothetical protein (NCBI ptt file)||106, 296|
|CAC2398||folC||Folylpolyglutamate synthase (NCBI ptt file)||296, 297|
|CAC2399||vals||Valyl-tRNA synthetase (NCBI ptt file)||296, 297|
|CAC2432||CAC2432||Predicted permease (NCBI ptt file)||82, 106|
|CAC2649||CAC2649||Uncharacterized conserved membrane protein (NCBI ptt file)||237, 296|
|CAC2656||CAC2656||Protein containing uncharacterized domain from NimC family (NCBI ptt file)||59, 296|
|CAC2657||CAC2657||Polyferredoxin (NCBI ptt file)||59, 296|
|CAC2658||glnA||Glutamine synthetase type III (NCBI ptt file)||99, 106|
|CAC3010||CAC3010||ATP-dependent RNA helicase (superfamily II), YDBR B.subtilis ortholog (NCBI ptt file)||84, 106|
|CAC3099||truA||Pseudouridylate synthase, TRUA (NCBI ptt file)||106, 255|
|CAC3100||CAC3100||Predicted permease (Cobalt permease subfamily) (NCBI ptt file)||84, 106|
|CAC3288||CAC3288||Iron-regulated ABC transporter ATPase subunit (SufC), VEG296 B.subtilis ortholog (NCBI ptt file)||201, 296|
|CAC3291||CAC3291||Selenocysteine lyase, NifS family (NCBI ptt file)||209, 296|
|CAC3675||CAC3675||Hypothetical secreted protein (NCBI ptt file)||106, 151|
|CAC3728||CAC3728||Hypothetical protein (NCBI ptt file)||132, 296|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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