Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2635(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC2635
|Gene||Common Name||Description||Module membership|
|CAC0003||CAC0003||Small conserved protein, ortholog of YAAA B.subtilis (NCBI ptt file)||105, 278|
|CAC0007||gyrA||DNA gyrase (topoisomerase II) A subunit (NCBI ptt file)||29, 278|
|CAC0111||CAC0111||Glutamine-binding periplasmic protein fused to glutamine permease (NCBI ptt file)||106, 278|
|CAC0178||appC||Oligopeptide transport permease protein (NCBI ptt file)||278, 314|
|CAC0180||appF||Oligopeptide ABC transporter, ATP-binding protein (NCBI ptt file)||179, 278|
|CAC0195||CAC0195||Predicted transcriptional regulator (NCBI ptt file)||80, 142|
|CAC0213||CAC0213||Protein containing LysM motif repeat (NCBI ptt file)||80, 110|
|CAC0627||CAC0627||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||278, 283|
|CAC0655||CAC0655||Hypothetical protein, CF-26 family (NCBI ptt file)||278, 318|
|CAC0675||CAC0675||Hypothetical protein (NCBI ptt file)||80, 196|
|CAC0702||CAC0702||Predicted lipoprotein, Med/BMP family (NCBI ptt file)||58, 278|
|CAC0714||secG||Membrane protein secG involved in protein secretion (NCBI ptt file)||25, 278|
|CAC0857||CAC0857||Glucan phosphorylase (NCBI ptt file)||80, 330|
|CAC0995||CAC0995||Predicted membrane protein (NCBI ptt file)||80, 345|
|CAC1019||CAC1019||Phospholipase C related protein (NCBI ptt file)||62, 80|
|CAC1020||CAC1020||Hypothetical protein (NCBI ptt file)||80, 367|
|CAC1031||feoB||FeoB-like GTPase, responsible for iron uptake (NCBI ptt file)||80, 83|
|CAC1045||CAC1045||Predicted permease (NCBI ptt file)||80, 176|
|CAC1451||CAC1451||AraC-type DNA-binding domain-containing protein (NCBI ptt file)||80, 140|
|CAC1453||rbsB||Ribose ABC transporter (ribose-binding periplasmic component) (NCBI ptt file)||235, 278|
|CAC1467||CAC1467||Transcriptional regulator, Lrp family (NCBI ptt file)||178, 278|
|CAC1542||CAC1542||Predicted membrane protein (NCBI ptt file)||278, 283|
|CAC1697||CAC1697||Uncharacterized conserved protein, YMXH B.subtilis homolog (NCBI ptt file)||80, 142|
|CAC1731||CAC1731||Predicted nucleotide-binding protein, YLOS B.subtilis ortholog (NCBI ptt file)||2, 278|
|CAC1750||CAC1750||SpoVS-related protein (NCBI ptt file)||29, 278|
|CAC2261||CAC2261||HD-hydrolase domain containing protein, YHAM B.subtilis ortholog (NCBI ptt file)||38, 278|
|CAC2306||CAC2306||Sporulation-specific sigma factor F (NCBI ptt file)||164, 278|
|CAC2307||CAC2307||Sigma factor F inhibitor spoIIAB (anti-sigma factor) (NCBI ptt file)||164, 278|
|CAC2321||CAC2321||Predicted glycosyltransferase (NCBI ptt file)||63, 278|
|CAC2449||CAC2449||Predicted flavoprotein (NCBI ptt file)||11, 80|
|CAC2450||CAC2450||Desulfoferrodoxin (NCBI ptt file)||80, 225|
|CAC2635||CAC2635||Hypothetical protein (NCBI ptt file)||80, 278|
|CAC2724||CAC2724||Hypothetical protein (NCBI ptt file)||51, 278|
|CAC2727||CAC2727||Predicted PHP family hydrolase (NCBI ptt file)||53, 278|
|CAC2827||CAC2827||S-adenosylmethionine-dependent methyltransferase (NCBI ptt file)||80, 204|
|CAC2828||CAC2828||Nudix (MutT) family hydrolase/pyrophosphatase (NCBI ptt file)||80, 204|
|CAC2854||recD||ATP-dependent exoDNAse (exonuclease V), alpha subunit, RecD (NCBI ptt file)||278, 286|
|CAC3008||CAC3008||CBS domain containing protein (NCBI ptt file)||80, 235|
|CAC3314||CAC3314||Nitroreductase family protein (NCBI ptt file)||27, 80|
|CAC3393||CAC3393||Hypothetical protein (NCBI ptt file)||80, 367|
|CAC3454||CAC3454||Predicted TIM-barrel enzyme, nifR3 family (NCBI ptt file)||80, 142|
|CAC3617||CAC3617||Uncharacterized membrane protein, YHAG B.subtilis homolog (NCBI ptt file)||80, 334|
|CAC3618||CAC3618||ABC-type polar amino acid transport system, ATPase component (NCBI ptt file)||80, 196|
|CAC3619||CAC3619||Amino acid ABC transporter, permease component (NCBI ptt file)||80, 196|
|CAC3620||CAC3620||Amino acid (probably glutamine) ABC transporter, periplasmic binding protein component (NCBI ptt file)||80, 196|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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