Organism : Clostridium acetobutylicum | Module List :
Uncharacterized conserved protein, YMXH B.subtilis homolog (NCBI ptt file)
Functional Annotations (2)
|Uncharacterized conserved protein||cog/ cog|
Regulation information for CAC1697(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC1697
|Uncharacterized conserved protein||cog/ cog|
Module neighborhood information for CAC1697
|Gene||Common Name||Description||Module membership|
|CAC0146||CAC0146||Related to ABC transporter permease component (NCBI ptt file)||62, 142|
|CAC0147||CAC0147||ABC transporter, ATP-binding protein (NCBI ptt file)||62, 142|
|CAC0195||CAC0195||Predicted transcriptional regulator (NCBI ptt file)||80, 142|
|CAC0196||CAC0196||NADH-dependent flavine oxidoreductase (NCBI ptt file)||142, 317|
|CAC0213||CAC0213||Protein containing LysM motif repeat (NCBI ptt file)||80, 110|
|CAC0675||CAC0675||Hypothetical protein (NCBI ptt file)||80, 196|
|CAC0738||CAC0738||DNA polymerase III epsilon subunit (3'-5' exonuclease) containing BRCT domain (NCBI ptt file)||62, 142|
|CAC0739||CAC0739||Predicted membrane protein (NCBI ptt file)||105, 142|
|CAC0857||CAC0857||Glucan phosphorylase (NCBI ptt file)||80, 330|
|CAC0995||CAC0995||Predicted membrane protein (NCBI ptt file)||80, 345|
|CAC1019||CAC1019||Phospholipase C related protein (NCBI ptt file)||62, 80|
|CAC1020||CAC1020||Hypothetical protein (NCBI ptt file)||80, 367|
|CAC1031||feoB||FeoB-like GTPase, responsible for iron uptake (NCBI ptt file)||80, 83|
|CAC1045||CAC1045||Predicted permease (NCBI ptt file)||80, 176|
|CAC1341||araD||Ribulose-5-phosphate 4-epimerase family protein (NCBI ptt file)||22, 142|
|CAC1342||araA||L-arabinose isomerase (NCBI ptt file)||22, 142|
|CAC1348||CAC1348||Transketolase, TKT (NCBI ptt file)||17, 142|
|CAC1349||galM||Aldose-1-epimerase (NCBI ptt file)||17, 142|
|CAC1430||CAC1430||Transcriptional regulators of sugar metabolism (deoR family) (NCBI ptt file)||95, 142|
|CAC1451||CAC1451||AraC-type DNA-binding domain-containing protein (NCBI ptt file)||80, 140|
|CAC1484||CAC1484||Nitroreductase family protein (NCBI ptt file)||142, 328|
|CAC1627||gyrB||DNA gyrase B subunit (NCBI ptt file)||105, 142|
|CAC1662||CAC1662||Hypothetical protein (NCBI ptt file)||142, 279|
|CAC1684||CAC1684||TYPA/BIPA type GTPase (NCBI ptt file)||142, 315|
|CAC1697||CAC1697||Uncharacterized conserved protein, YMXH B.subtilis homolog (NCBI ptt file)||80, 142|
|CAC1811||CAC1811||Periplasmic serine protease, YMFB B.subtilis ortholog (NCBI ptt file)||142, 269|
|CAC2449||CAC2449||Predicted flavoprotein (NCBI ptt file)||11, 80|
|CAC2450||CAC2450||Desulfoferrodoxin (NCBI ptt file)||80, 225|
|CAC2459||CAC2459||2-oxoacid:ferredoxin oxidoreductase, alpha subunit (NCBI ptt file)||142, 279|
|CAC2584||CAC2584||Protein containing ChW-repeats (NCBI ptt file)||29, 142|
|CAC2635||CAC2635||Hypothetical protein (NCBI ptt file)||80, 278|
|CAC2827||CAC2827||S-adenosylmethionine-dependent methyltransferase (NCBI ptt file)||80, 204|
|CAC2828||CAC2828||Nudix (MutT) family hydrolase/pyrophosphatase (NCBI ptt file)||80, 204|
|CAC3008||CAC3008||CBS domain containing protein (NCBI ptt file)||80, 235|
|CAC3031||hisC||Histidinol-phosphate aminotransferase (NCBI ptt file)||142, 279|
|CAC3077||CAC3077||Uncharacterized FAD-dependent dehydrogenase (NCBI ptt file)||118, 142|
|CAC3078||CAC3078||Uncharacterized secreted protein, YBBR Bacillus subtilis homolog (NCBI ptt file)||114, 142|
|CAC3194||murD||UDP-N-acetylmuramoylalanine D-glutamate ligase (NCBI ptt file)||44, 142|
|CAC3204||CAC3204||Cell cycle protein MesJ ortholog, ATPase of the PP-loop superamily (NCBI ptt file)||142, 279|
|CAC3314||CAC3314||Nitroreductase family protein (NCBI ptt file)||27, 80|
|CAC3334||CAC3334||Multimeric flavodoxin WrbA family protein (NCBI ptt file)||66, 142|
|CAC3393||CAC3393||Hypothetical protein (NCBI ptt file)||80, 367|
|CAC3452||xynD||Beta-xylosidase, family 43 glycosyl hydrolase (NCBI ptt file)||142, 170|
|CAC3454||CAC3454||Predicted TIM-barrel enzyme, nifR3 family (NCBI ptt file)||80, 142|
|CAC3594||CAC3594||Glycosyltransferase (NCBI ptt file)||142, 315|
|CAC3617||CAC3617||Uncharacterized membrane protein, YHAG B.subtilis homolog (NCBI ptt file)||80, 334|
|CAC3618||CAC3618||ABC-type polar amino acid transport system, ATPase component (NCBI ptt file)||80, 196|
|CAC3619||CAC3619||Amino acid ABC transporter, permease component (NCBI ptt file)||80, 196|
|CAC3620||CAC3620||Amino acid (probably glutamine) ABC transporter, periplasmic binding protein component (NCBI ptt file)||80, 196|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
- 2. Source gene
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