Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC3613(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC3613
|Gene||Common Name||Description||Module membership|
|CAC0185||CAC0185||Uncharacterized membrane protein, YBBC B.subtilis ortholog (NCBI ptt file)||115, 314|
|CAC0204||srta||Sortase (surface protein transpeptidase), YHCS B.subtilis ortholog (NCBI ptt file)||115, 207|
|CAC0352||CAC0352||Uncharacterized conserved membrane protein, SANA family (NCBI ptt file)||115, 345|
|CAC0576||CAC0576||Hypothetical protein (NCBI ptt file)||115, 183|
|CAC0597||gerKB||Spore germination protein, gerKB (NCBI ptt file)||115, 185|
|CAC0658||CAC0658||Fe-S oxidoreductase (NCBI ptt file)||168, 293|
|CAC0659||CAC0659||Predicted Zn-dependent peptidase (NCBI ptt file)||168, 293|
|CAC0661||CAC0661||ABC transporter ATP-binding protein (multidrug resistance protein) (NCBI ptt file)||168, 293|
|CAC0830||CAC0830||Response regulator (NCBI ptt file)||67, 115|
|CAC0833||CAC0833||ABC-type multidrug transport system (daunorubicin resistance), ATPase component (NCBI ptt file)||115, 207|
|CAC0834||CAC0834||Predicted integral membrane protein (NCBI ptt file)||75, 115|
|CAC0835||CAC0835||Predicted integral membrane protein (NCBI ptt file)||115, 207|
|CAC0852||CAC0852||Amino acid permease (NCBI ptt file)||115, 317|
|CAC1074||CAC1074||Predicted permease (NCBI ptt file)||168, 293|
|CAC1439||CAC1439||Uncharacterized conserved protein (NCBI ptt file)||115, 158|
|CAC1440||CAC1440||Hypothetical protein (NCBI ptt file)||115, 158|
|CAC1510||CAC1510||Hypothetical protein (NCBI ptt file)||293, 305|
|CAC1591||CAC1591||Uncharacterized membrane protein, YCGQ B. subtilis homolog (NCBI ptt file)||113, 115|
|CAC1609||CAC1609||Zn-finger containing protein (NCBI ptt file)||293, 305|
|CAC1643||CAC1643||Hypothetical protein, CF-38 family (NCBI ptt file)||115, 140|
|CAC1776||CAC1776||HAD superfamily hydrolase (NCBI ptt file)||168, 293|
|CAC2041||CAC2041||ABC transported MDR-type, permease component (NCBI ptt file)||60, 293|
|CAC2403||CAC2403||Predicted membrane protein (NCBI ptt file)||68, 115|
|CAC2404||CAC2404||Glycosyltransferase (NCBI ptt file)||168, 293|
|CAC2405||CAC2405||Predicted glycosyltransferase (NCBI ptt file)||168, 293|
|CAC2578||CAC2578||Glycosyltransferase (NCBI ptt file)||168, 293|
|CAC2580||CAC2580||Hypothetical protein, CF-41 family (NCBI ptt file)||155, 293|
|CAC2662||CAC2662||Hypothetical protein (NCBI ptt file)||60, 115|
|CAC2812||CAC2812||Hypothetical protein (NCBI ptt file)||24, 115|
|CAC2944||CAC2944||N-terminal domain intergin-like repeats and c-terminal- cell wall-associated hydrolase domain (NCBI ptt file)||155, 293|
|CAC3011||CAC3011||Predicted membrane protein (NCBI ptt file)||65, 115|
|CAC3229||CAC3229||NADH:flavin oxidoreductases, Old Yellow Enzyme family (NCBI ptt file)||42, 293|
|CAC3351||CAC3351||Uncharacterized membrane protein, YCBP B.subtilis ortholog (NCBI ptt file)||1, 115|
|CAC3465||CAC3465||Amidase from nicotinamidase family (NCBI ptt file)||115, 283|
|CAC3466||CAC3466||Transcriptional regulator, LysR family (NCBI ptt file)||115, 283|
|CAC3467||CAC3467||Uncharacterized conserved protein, phnB family (NCBI ptt file)||115, 283|
|CAC3613||CAC3613||Hypothetical protein (NCBI ptt file)||115, 293|
|CAC3614||CAC3614||Uncharacterized conserved membrane protein, possible permease (NCBI ptt file)||115, 158|
|CAC3615||CAC3615||Uncharacterized conserved membrane protein, possible permease (NCBI ptt file)||115, 158|
|CAC3616||CAC3616||ABC transport system, ATPase component (NCBI ptt file)||115, 158|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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