Data Store
| Title | Description | Measurement | Type | FIle Type | Added | Organism | References | File |
|---|---|---|---|---|---|---|---|---|
| PRIME-derived models |
Matlab workspace containing 8 models - monoColonized and CoColonized models with ccpA, codY KOs, and the double KO model) |
Metabolic Network | Computational Model | Other | 08/30/2021 | Clostridium difficile 630 | Immanuel et al., 2021 | Download |
| icdf836 metabolic model |
Model file for icdf836 metabolic model |
Metabolic Network | Computational Model | Other | 08/30/2021 | Clostridium difficile 630 | Arrieta-Ortiz et al., 2021 | Download |
| Transcriptional Compendium Metadata |
Metadata information with brief description of experiments included in the transcriptional compendium. |
Transcriptome | Other | Excel Worksheet | 07/13/2021 | Clostridium difficile 630 | Arrieta-Ortiz et al., 2021 | Download |
| 13 TF Regulons |
Regulons for 13 TFs collected from the available literature |
Regulatory Network | Computational Model | Comma Separated (.csv) | 11/11/2020 | Clostridium difficile 630 | Download | |
| Metabolic Reactions |
Metabolic model reaction details |
Metabolic Network | Computational Model | Comma Separated (.csv) | 11/10/2020 | Clostridium difficile 630 | Download | |
| Hypergeometric Influences |
The enrichment analysis for the TF regulons determined via hypergeometric test |
Regulatory Network | Computational Model | Comma Separated (.csv) | 11/10/2020 | Clostridium difficile 630 | Download | |
| Inferelator Influences |
Regulatory network influences from TF to modules as identified by Inferelator algorithm. |
Regulatory Network | Computational Model | Comma Separated (.csv) | 11/20/2020 | Clostridium difficile 630 | Download | |
| Regulatory Model Details |
Tab-delimited file of Gene Regulatory Network model details. |
Regulatory Network | Computational Model | Tab-delimited (.txt) | 04/16/2020 | Clostridium difficile 630 | Unpublished | Download |
| Transcriptional_compendia_log2_ratios |
Compendium of 151 transcriptome profiles (log2 ratios) for C. difficile 630 collected from GEO. |
Transcriptome | RNA_Seq | Comma Separated (.csv) | 04/16/2020 | Clostridium difficile 630 | Unpublished | Download |