CD630_10090

Displaying 11 - 20 of 22

Below is a list of putative TF-module interactions that were predicted by using the algorithm, inferelator. Only the interactions with confidence scores in the top 10% of the non-zero scores were included.

1. Betas: correspond to the average coefficients of the Bayesian regressions between module expression and TF expression profiles. The values indicate the magnitude and direction (activation or repression for positive or negative values, respectively) of each TF-module interaction. 2. Confidence scores: indicate the likelihood of the TF-module interactions.

* Given that translation start was used to define the 3' end of putative promoters, some cis-regulatory motifs are likely to be ribosome binding sites (i.e., Shine-Dalgarno sequence). RBS is typically a six nucleotide sequence 5'-GGAGGA-3'.

Default Filter: > 0.1 (Absolute Beta)
TF Module Beta Confidence Score
CD630_10090 161 0.24 0.27
CD630_10090 196 0.25 0.40
CD630_10090 208 0.11 0.12
CD630_10090 229 0.19 0.26
CD630_10090 246 0.98 1.00
CD630_10090 256 0.12 0.20
CD630_10090 266 0.18 0.28
CD630_10090 269 -0.19 0.24
CD630_10090 277 0.15 0.32
CD630_10090 285 0.17 0.30
Default filter: <= 0.05
Default filter: >4
CD630_10090 is not predicted to regulate any modules via hypergeometric test by using default filters

Functional

%1 doesn't have any functional assignment.