CD630_16930

Displaying 21 - 30 of 34

Below is a list of putative TF-module interactions that were predicted by using the algorithm, inferelator. Only the interactions with confidence scores in the top 10% of the non-zero scores were included.

1. Betas: correspond to the average coefficients of the Bayesian regressions between module expression and TF expression profiles. The values indicate the magnitude and direction (activation or repression for positive or negative values, respectively) of each TF-module interaction. 2. Confidence scores: indicate the likelihood of the TF-module interactions.

* Given that translation start was used to define the 3' end of putative promoters, some cis-regulatory motifs are likely to be ribosome binding sites (i.e., Shine-Dalgarno sequence). RBS is typically a six nucleotide sequence 5'-GGAGGA-3'.

Default Filter: > 0.1 (Absolute Beta)
TF Module Beta Confidence Score
CD630_16930 161 -0.40 0.56
CD630_16930 170 0.37 0.49
CD630_16930 186 0.21 0.30
CD630_16930 191 -0.34 0.48
CD630_16930 209 0.70 0.82
CD630_16930 250 0.33 0.50
CD630_16930 253 -0.14 0.21
CD630_16930 280 0.27 0.40
CD630_16930 303 0.23 0.33
CD630_16930 320 0.17 0.26
Default filter: <= 0.05
Default filter: >4
CD630_16930 is not predicted to regulate any modules via hypergeometric test by using default filters

Functional

%1 doesn't have any functional assignment.