CD630_34990 spoVT

Displaying 31 - 40 of 53

Below is a list of putative TF-module interactions that were predicted by using the algorithm, inferelator. Only the interactions with confidence scores in the top 10% of the non-zero scores were included.

1. Betas: correspond to the average coefficients of the Bayesian regressions between module expression and TF expression profiles. The values indicate the magnitude and direction (activation or repression for positive or negative values, respectively) of each TF-module interaction. 2. Confidence scores: indicate the likelihood of the TF-module interactions.

* Given that translation start was used to define the 3' end of putative promoters, some cis-regulatory motifs are likely to be ribosome binding sites (i.e., Shine-Dalgarno sequence). RBS is typically a six nucleotide sequence 5'-GGAGGA-3'.

Default Filter: > 0.1 (Absolute Beta)
TF Module Beta Confidence Score
CD630_34990 242 0.81 0.87
CD630_34990 247 -0.37 0.44
CD630_34990 251 0.87 0.99
CD630_34990 259 -0.60 0.72
CD630_34990 261 0.72 0.83
CD630_34990 272 0.53 0.68
CD630_34990 273 0.20 0.44
CD630_34990 285 0.45 0.80
CD630_34990 289 -0.85 0.97
CD630_34990 298 0.83 0.95
Default filter: <= 0.05
Default filter: >4
CD630_34990 is not predicted to regulate any modules via hypergeometric test by using default filters

Functional

%1 doesn't have any functional assignment.