Poor vs Rich diet

The in vivo responses elicited by Clostridium difficile in response to the gut commensal B. thetaiotaomicron and diet

Series: GSE60751 | Pubmed ID: | Type: Expression profiling by array

Overall Design:In vitro transcriptional profiles of Clostridium difficile obtained from cecal contents of germ-free or Bt-monocolonized mice on a standard, polysaccharide rich or polysaccharide deficient diet. 4 samples/group. 2 control genomic DNA samples for Clostridium difficile and 2 reference genomic DNA samples for Bacteroides thetaiotaomicron; ; Please note that 4 control samples (genomic DNA) were used to determine whether the genomic DNA correctly bound to the probes and thus, were not included in data processing (i.e no processed/normalized data).

There are 4 items in this group

Module_370 - Residual: 0.55 Type: Module
Motif 1: e-value: 0.00000009
Motif 2: e-value: 1.9
1st Quintile: In vitro growth
5th Quintile: Poor vs Rich diet
Module_176 - Residual: 0.47 Type: Module
Motif 1: e-value: 4e-31
Motif 2: e-value:
1st Quintile:
5th Quintile: Poor vs Rich diet
Module_121 - Residual: 0.40 Type: Module
Motif 1: e-value:
Motif 2: e-value:
1st Quintile: In vitro growth
5th Quintile: Poor vs Rich diet
Module_8 - Residual: 0.31 Type: Module
Motif 1: e-value:
Motif 2: e-value:
1st Quintile: In vivo vs. In vitro
5th Quintile: Poor vs Rich diet