10063 Pep_deformylase superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
10063	chr_15	Pep_deformylase superfamily	150880	152529	+	Pep_deformylase superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7441959	Thaps10063.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0296

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0065	0.48	0.0000029 0.0000057

Most Highly Correlated Transcripts

21670 hypothetical protein 0.8217	11004 hypothetical protein 0.7577	1913 AAA 0.7497	24993 hypothetical protein 0.7431	2018 HA 0.7394	26553 ABC_MTABC3_MDL1_MDL2 0.7376
22918 hypothetical protein 0.7373	bd1810 (bd1810) FAD_binding_4 0.7284	2714 hypothetical protein 0.7246	12570 DEXDc 0.7185

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Pep_deformylase superfamily		Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-...	-	82.6133	1.84E-18	154 - 379	superfamily	260286

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_6914	PHATRDRAFT_6914	153912	198026	195025	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005506 GO:0006412 GO:0042586 -

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