12570 DEXDc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
12570 chr_15 DEXDc 845836 848749 - DEXDc

Synonyms

NCBI ID Ensembl Genomes exon ID
7443986 Thaps12570.2, Thaps12570.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0415

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0187
 0.36

Most Highly Correlated Transcripts

bd654

(bd654) Sec1 superfamily
0.8544

25397

MviM
0.8535

23494

hypothetical protein
0.8511

21852

hypothetical protein
0.8458

22333

hypothetical protein
0.8437

22918

hypothetical protein
0.8352

268194

(Tp_Myb4R1b) SANT
0.8288

21122

Nipped-B_C
0.8254

5829

hypothetical protein
0.8208

23754

hypothetical protein
0.8193

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 104.727 1.17E-25 156 - 298 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 104.727 1.17E-25 156 - 298 superfamily 266587
HA2 Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... cl04503 104.607 3.40E-26 620 - 717 specific 252575
HA2 superfamily Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... - 104.607 3.40E-26 620 - 717 superfamily 262181
OB_NTP_bind superfamily Oligonucleotide/oligosaccharide-binding (OB)-fold; This family is found towards the C-terminus of... - 66.5526 6.87E-13 757 - 878 superfamily 254381
OB_NTP_bind superfamily Oligonucleotide/oligosaccharide-binding (OB)-fold; This family is found towards the C-terminus of... - 66.5526 6.87E-13 757 - 878 superfamily 254381
DEXDc DEAD-like helicases superfamily; DEAD-like helicases superfamily. - 110.274 5.35E-27 138 - 321 multi-dom 214692

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54577 PHATRDRAFT_54577 209561 318225 Not available Not available AT1G58060.1 481054

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0008026 GO:0003676 GO:0004386 GO:0004866 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008026

ATP-dependent helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0004386

helicase activity

Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

GO:0004866

endopeptidase inhibitor activity

Details: 
Stops, prevents or reduces the activity of an endopeptidase, any enzyme that hydrolyzes nonterminal peptide bonds in polypeptides.
GO Category: 
MF

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