10172 SpoVKThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
10172	chr_15	SpoVK	503870	512504	-	SpoVK

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449495	Thaps10172.3, Thaps10172.5, Thaps10172.2, Thaps10172.1, Thaps10172.7, Thaps10172.6, Thaps10172.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0370

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0014	0.46	2.6 6.6

Most Highly Correlated Transcripts

24035 Peptidase_C19 superfamily 0.9075	25168 hypothetical protein 0.9061	25593 hypothetical protein 0.8993	5788 TFIIS_M 0.8978	24618 hypothetical protein 0.8885	23645 DUF3638 superfamily 0.8881
22882 PUB 0.8876	21158 hypothetical protein 0.8864	21997 TPR_12 0.8813	22922 hypothetical protein 0.8798

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TRAPPC9-Trs120 superfamily		Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; This region is found at the N...	-	69.3904	1.03E-11	477 - 578	superfamily	268337
SpoVK		ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]	-	82.564	4.11E-16	2393 - 2567	multi-dom	223540

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_45340	PHATRDRAFT_45340	232245	227659	235066	Cre07.g325762.t1.1	Not available	503471

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0000166 GO:0017111 GO:0005524 -

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