10547 Init_tRNA_PT superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
10547	chr_17	Init_tRNA_PT superfamily	31711	33589	-	Init_tRNA_PT superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450329	Thaps10547.3, Thaps10547.1, Thaps10547.4, Thaps10547.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0377

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0119	0.42	8.5 8.5

Most Highly Correlated Transcripts

5690 YdcF-like 0.8668	10753 hypothetical protein 0.8623	10533 hypothetical protein 0.8599	264090 AAA_12 0.8556	38475 HA2 0.8538	32229 MogA_MoaB 0.842
10548 hypothetical protein 0.842	268010 (RPC2) PRK08565 0.8383	32395 RNA_pol 0.8329	13308 PLN02948 0.8306

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Init_tRNA_PT superfamily		Initiator tRNA phosphoribosyl transferase; This enzyme (EC:2.4.2.-) modifies exclusively the...	-	137.524	7.50E-36	88 - 384	superfamily	252428

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	254553	154249	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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