10869 Sm_like superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10869 chr_18 Sm_like superfamily 340468 341796 - Sm_like superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7444262 Thaps10869.1, Thaps10869.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0217

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0281
 0.33

Most Highly Correlated Transcripts

3071

NA
0.9178

4448

DUF914
0.8934

3280

COG0790
0.8919

20846

LPLAT_MGAT-like
0.8839

8414

NA
0.879

6472

hypothetical protein
0.8707

5659

hypothetical protein
0.8689

3803

hypothetical protein
0.8682

5599

HVSL superfamily
0.8646

8599

hypothetical protein
0.8611

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sm_like superfamily Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form... - 69.2098 5.48E-15 229 - 278 superfamily 260307

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43068 PHATRDRAFT_43068 198581 263305 Not available Not available Not available 377272

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005634 GO:0005732 GO:0006397 -

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0005732

small nucleolar ribonucleoprotein complex

Details: 
A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type.
GO Category: 
CC

GO:0006397

mRNA processing

Details: 
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
GO Category: 
BP

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