11211 Reprolysin_5
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
11211 chr_19a_19 Reprolysin_5 458335 461161 - Reprolysin_5

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0019

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0009
 0.42

Most Highly Correlated Transcripts

bd812

(bd812) NA
0.8944

bd811

(bd811) NA
0.8843

9230

hypothetical protein
0.8574

38230

MYSc
0.8021

22916

DUF1162 superfamily
0.8013

8244

Lipase superfamily
0.7973

263409

Chorismate_bind superfamily
0.797

5321

CobN-Mg_chel superfamily
0.7961

12602

MYSc
0.7923

261495

Peptidase_M36
0.785

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Reprolysin_5 Metallo-peptidase family M12; Metallo-peptidase family M12. cl00064 132.902 1.75E-35 245 - 428 specific 257991
ZnMc superfamily Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches,... - 132.902 1.75E-35 245 - 428 superfamily 260167

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004222 GO:0006508 GO:0008237 GO:0008270 -

GO:0004222

metalloendopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008237

metallopeptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

Add comment

Log in to post comments