11974 Rav1p_C superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
11974 chr_23 Rav1p_C superfamily 4690 15006 + Rav1p_C superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7442699 Thaps11974.2, Thaps11974.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0492

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0145
 0.29

Most Highly Correlated Transcripts

22922

hypothetical protein
0.8871

23971

zf-UBR
0.8796

24035

Peptidase_C19 superfamily
0.8714

262797

Sec7
0.8701

5788

TFIIS_M
0.8692

264276

Vps8 superfamily
0.8661

263610

COG3899
0.8582

25811

hypothetical protein
0.8567

21158

hypothetical protein
0.8489

2987

hypothetical protein
0.8458

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Rav1p_C superfamily RAVE protein 1 C terminal; This domain family is found in eukaryotes, and is typically between 621... - 110.556 1.66E-24 1923 - 2062 superfamily 256917

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49814 PHATRDRAFT_49814 205312 246275 461741 Cre04.g223000.t1.1 AT2G46560.1 488618

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0007242 GO:0005515 GO:0004339 -

GO:0007242

NA

Details: 
NA
GO Category: 
NA

GO:0005515

protein binding

Details: 
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO Category: 
MF

GO:0004339

glucan 1,4-alpha-glucosidase activity

Details: 
Catalysis of the hydrolysis of terminal (1->4)-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose.
GO Category: 
MF

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