13117 GTPBP1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
13117 chr_4 GTPBP1 418467 420758 + GTPBP1

Synonyms

NCBI ID Ensembl Genomes exon ID
7447442 Thaps13117.3, Thaps13117.4, Thaps13117.2, Thaps13117.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0172

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0136
 0.28

Most Highly Correlated Transcripts

270222

0.8927

3837

UshA
0.8793

263219

MFS_1
0.8792

29322

AAT_I superfamily
0.8766

25944

p450 superfamily
0.8751

23973

BT1
0.866

269113

M3_like
0.8646

25535

hypothetical protein
0.8628

6066

APG6
0.8599

1762

PRA1 superfamily
0.8583

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2.... cl02787 89.5862 1.32E-21 344 - 435 specific 239665
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 89.5862 1.32E-21 344 - 435 superfamily 261449
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 223.321 6.05E-69 109 - 333 superfamily 266525
Translation_factor_III superfamily Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G... - 106.558 1.05E-27 439 - 531 superfamily 261448
GTPBP1 GTPase [General function prediction only] - 327.888 3.57E-105 1 - 531 multi-dom 227583

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9185 PHATRDRAFT_9185 276320 256773 460988 Cre03.g159650.t1.2 Not available 547595

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0006412 GO:0003924 GO:0008547 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0008547

NA

Details: 
NA
GO Category: 
NA

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