13175 COG4178
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
13175 chr_7 COG4178 121167 123840 + COG4178

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0075

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0155
 0.30

Most Highly Correlated Transcripts

bd529

(bd529) SNF2_N
0.9285

bd624

(bd624) Glyco_transf_34 superfamily
0.9263

bd439

(bd439) POLBc_alpha
0.9152

bd718

(bd718) PRK10387
0.9052

bd843

(bd843) NA
0.8976

11354

hypothetical protein
0.8963

2728

hypothetical protein
0.8925

32661

ABC_ATPase superfamily
0.8915

2085

hypothetical protein
0.8885

263579

2A0109
0.8884

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABCD_peroxisomal_ALDP ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding... cl17201 215.095 2.15E-65 474 - 688 specific 213190
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 215.095 2.15E-65 474 - 688 superfamily 266551
ABC_membrane_2 superfamily ABC transporter transmembrane region 2; This domain covers the transmembrane of a small family of... - 201.69 4.96E-59 117 - 398 superfamily 260492
COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function... - 486.817 2.22E-163 117 - 694 multi-dom 226646

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
bd415 Not available 227336 233241 Not available Cre01.g029250.t1.2 Not available 474156

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

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