13572 (MTS1) PRK11893
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
13572 chr_12 (MTS1) PRK11893 345898 347799 - PRK11893

Synonyms

NCBI ID Ensembl Genomes exon ID
7445794 Thaps13572.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0241

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0233
 0.34

Most Highly Correlated Transcripts

33088

Obg_CgtA
0.864

bd190

(bd190) SrmB
0.8557

bd621

(bd621) NA
0.85

bd1709

(bd1709) NA
0.819

bd1939

(bd1939) NA
0.8178

37881

DUF3172 superfamily
0.8116

bd96

(bd96) eIF-3_zeta
0.8021

263845

RRM_SF superfamily
0.8002

31938

Pumilio
0.7946

268061

hypothetical protein
0.7906

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MetRS_core catalytic core domain of methioninyl-tRNA synthetases; Methionine tRNA synthetase (MetRS) catalytic... cl00015 391.51 2.41E-131 51 - 398 specific 173907
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 391.51 2.41E-131 51 - 398 superfamily 260139
Anticodon_Ia_like superfamily Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; This domain is... - 101.798 2.74E-25 407 - 529 superfamily 264512
PRK11893 methionyl-tRNA synthetase; Reviewed - 564.507 0 49 - 563 multi-dom 237012

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_26837 PHATRDRAFT_26837 279004 211661 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Aminoacyl-tRNA biosynthesis map00970

GO Terms

GO:0004812 GO:0005524 GO:0006418 GO:0004825 GO:0006431 -

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0004825

methionine-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-methionine + tRNA(Met) = AMP + diphosphate + L-methionyl-tRNA(Met).
GO Category: 
MF

GO:0006431

methionyl-tRNA aminoacylation

Details: 
The process of coupling methionine to methionyl-tRNA, catalyzed by methionyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

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