14096 (AMT3) amt
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
14096 chr_9 (AMT3) amt 391623 393524 + amt

Synonyms

NCBI ID Ensembl Genomes exon ID
7443520 Thaps14096.3, Thaps14096.2, Thaps14096.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0329

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0100
 0.39

Most Highly Correlated Transcripts

bd1890

(bd1890) NA
0.8503

4978

hypothetical protein
0.8461

10533

hypothetical protein
0.823

22918

hypothetical protein
0.8169

264090

AAA_12
0.816

25417

hypothetical protein
0.8109

268194

(Tp_Myb4R1b) SANT
0.8049

260906

pyridoxal_pyridoxamine_kinase
0.8047

36301

HMG-box
0.8043

22355

hypothetical protein
0.8013

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
amt ammonium transporter; The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally... cl03012 361.585 1.09E-119 47 - 468 specific 233145
Ammonium_transp superfamily Ammonium Transporter Family; Ammonium Transporter Family. - 361.585 1.09E-119 47 - 468 superfamily 261545

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
19913 Not available 180686 235101 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006810 GO:0008519 GO:0016020 -

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0008519

ammonium transmembrane transporter activity

Details: 
Catalysis of the transfer of ammonium from one side of a membrane to the other. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.
GO Category: 
MF

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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