15007 Pumilio superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
15007 chr_7 Pumilio superfamily 102501 104140 + Pumilio superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7446590 Thaps15007.4, Thaps15007.3, Thaps15007.2, Thaps15007.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0464

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0050
 0.45

Most Highly Correlated Transcripts

bd467

(bd467) Cytochrome_b_N
0.8744

bd2073

(bd2073) psbB
0.8647

bd1652

(bd1652) ABC_ATPase superfamily
0.852

bd1563

(bd1563) atpB
0.8511

bd1092

(bd1092) NA
0.8437

bd1304

(bd1304) Ycf4
0.8426

bd466

(bd466) cytochrome_b_C
0.8363

bd1387

(bd1387) psbE
0.8319

bd1465

(bd1465) PKc_like superfamily
0.8276

bd2088

(bd2088) rbcL
0.8243

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Pumilio superfamily Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology domain)... - 265.224 2.23E-84 156 - 450 superfamily 153420

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0016071 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0016071

mRNA metabolic process

Details: 
The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.
GO Category: 
BP

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