17841 RNase_PH superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
17841 chr_5 RNase_PH superfamily 681385 682432 + RNase_PH superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7446415 Thaps17841.2, Thaps17841.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0453

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0248
 0.34

Most Highly Correlated Transcripts

bd1959

(bd1959) NA
0.8854

268194

(Tp_Myb4R1b) SANT
0.8606

bd690

(bd690) NA
0.8525

263610

COG3899
0.8483

bd1941

(bd1941) NA
0.8428

263599

COG3899
0.8418

1943

(Tp_HSF_2.6e) HSF_DNA-bind superfamily
0.8416

22928

hypothetical protein
0.8303

bd643

(bd643) NA
0.8292

bd1849

(bd1849) NA
0.8288

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNase_PH superfamily RNase PH-like 3'-5' exoribonucleases; RNase PH-like 3'-5'... - 224.73 2.31E-72 16 - 274 superfamily 261591
PRK03983 exosome complex exonuclease Rrp41; Provisional - 161.34 1.18E-47 16 - 273 multi-dom 235187

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_23286 PHATRDRAFT_23286 199423 151678 240695 Cre06.g284500.t1.2 AT3G61620.2 Not available

KEGG

KEGG description KEGG Pathway
RNA degradation map03018

GO Terms

GO:0000175 GO:0003723 GO:0006396 GO:0004534 GO:0016896 -

GO:0000175

3'-5'-exoribonuclease activity

Details: 
Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule.
GO Category: 
MF

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0004534

5'-3' exoribonuclease activity

Details: 
Catalysis of the sequential cleavage of mononucleotides from a free 5' terminus of an RNA molecule.
GO Category: 
MF

GO:0016896

exoribonuclease activity, producing 5'-phosphomonoesters

Details: 
Catalysis of the hydrolysis of ester linkages within ribonucleic acids by removing nucleotide residues from the 3' or 5' end to yield 5' phosphomonoesters.
GO Category: 
MF

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