12982 AAA superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
12982 chr_4 AAA superfamily 2158959 2162226 - AAA superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7452236 Thaps12982.3, Thaps12982.4, Thaps12982.2, Thaps12982.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0151
 0.31

Most Highly Correlated Transcripts

7771

hypothetical protein
0.9127

31404

XRN1
0.9108

18557

HrpA
0.9093

35510

SET
0.9063

17271

FtsJ
0.9003

14109

SrmB
0.8861

40402

SrmB
0.8835

36640

DEXDc
0.8816

17292

Spb1_C superfamily
0.8782

1882

Gn_AT_II superfamily
0.8766

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 96.2122 9.76E-23 578 - 797 superfamily 267297

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_23838 PHATRDRAFT_23838 178949 180444 216670 Cre03.g161800.t1.2 AT1G67120.1 263134

KEGG

KEGG description KEGG Pathway
Ribosome biogenesis in eukaryotes map03008

GO Terms

GO:0005524 GO:0000166 GO:0017111 GO:0031177 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

GO:0031177

phosphopantetheine binding

Details: 
Interacting selectively and non-covalently with phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate).
GO Category: 
MF

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