31404 XRN1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31404 chr_1 XRN1 1599750 1602002 + XRN1

Synonyms

NCBI ID Ensembl Genomes exon ID
7445277 Thaps31404.2, Thaps31404.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0231

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0151
 0.31

Most Highly Correlated Transcripts

12982

AAA superfamily
0.9108

17292

Spb1_C superfamily
0.8997

19899

Bromodomain superfamily
0.8988

262251

Nucleotidyl_cyc_III superfamily
0.8979

263786

(ZFP20) zf-TAZ
0.8973

33984

PKc_like superfamily
0.8956

262645

Glyco_18
0.8912

264868

DEXDc
0.8912

263297

Glyco_18
0.8912

993

PROCN superfamily
0.8909

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
XRN_N superfamily XRN 5'-3' exonuclease N-terminus; This family aligns residues towards the N-... - 281.918 1.05E-89 3 - 241 superfamily 251765
XRN1 5'-3' exonuclease [DNA replication, recombination, and repair / Cell division and... - 435.122 1.58E-139 2 - 681 multi-dom 227382

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_5588 PHATRDRAFT_5588 225760 284862 62942 Cre06.g280050.t1.2 AT1G75660.1 Not available

KEGG

KEGG description KEGG Pathway
RNA degradation map03018

GO Terms

GO:0004527 GO:0005634 -

GO:0004527

exonuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

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