20431 zf-CHC2 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20431 chr_17 zf-CHC2 superfamily 94719 95288 + zf-CHC2 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7453117 Thaps20431.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0428

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0097
 0.39

Most Highly Correlated Transcripts

11434

hypothetical protein
0.8348

bd875

(bd875) NA
0.8179

16679

RRM_PPIL4
0.8176

263816

SNF2_N
0.8092

5776

PROCN superfamily
0.8088

bd1545

(bd1545) psbC
0.8073

14109

SrmB
0.8067

8336

hypothetical protein
0.8027

6656

PROCN
0.8004

bd1313

(bd1313) psbH
0.7991

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
zf-CHC2 superfamily CHC2 zinc finger; This domain is principally involved in DNA binding in DNA primases. - 103.085 2.47E-28 44 - 149 superfamily 248064

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 155392 Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0003896 GO:0006260 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003896

DNA primase activity

Details: 
Catalysis of the synthesis of a short RNA primer on a DNA template, providing a free 3'-OH that can be extended by DNA-directed DNA polymerases. Catalyzed by a DNA-directed RNA polymerase that forms a complex with alpha DNA polymerase.
GO Category: 
MF

GO:0006260

DNA replication

Details: 
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO Category: 
BP

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