20654 Reprolysin_3
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
20654 chr_1 Reprolysin_3 601186 603552 + Reprolysin_3
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0408
hypothetical protein
0.8925
hypothetical protein
0.8876
Peptidase_A22B superfamily
0.8854
hypothetical protein
0.8714
(APA1) Adaptin_N
0.8698
hypothetical protein
0.8685
Vps51
0.8566
EEP superfamily
0.8545
hypothetical protein
0.8524
FAAL
0.85
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Reprolysin_3 Metallo-peptidase family M12B Reprolysin-like; This zinc-binding metallo-peptidase has the... cl00064 98.5507 4.57E-24 287 - 412 specific 257898
ZnMc superfamily Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches,... - 98.5507 4.57E-24 287 - 412 superfamily 260167
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available
KEGG description KEGG Pathway
Not available Not available
GO:0004222 GO:0006508 GO:0003677 GO:0005634 GO:0006355 GO:0008237 GO:0008270 -

metalloendopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

metallopeptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF
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