20911 RNA14
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20911 chr_1 RNA14 1963210 1967106 - RNA14

Synonyms

NCBI ID Ensembl Genomes exon ID
7449772 Thaps20911.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0357

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0151
 0.31

Most Highly Correlated Transcripts

bd1360

(bd1360) ycf24
0.925

bd1319

(bd1319) ycf16
0.8883

bd1023

(bd1023) atpD
0.8823

bd598

(bd598) atpG
0.8813

bd467

(bd467) Cytochrome_b_N
0.876

bd1290

(bd1290) atpH
0.8747

bd794

(bd794) NA
0.8739

bd1318

(bd1318) atpF
0.8735

bd1378

(bd1378) atpI
0.8733

bd466

(bd466) cytochrome_b_C
0.8706

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Suf superfamily Suppressor of forked protein (Suf); This family consists of several eukaryotic suppressor of forked... - 79.1875 2.68E-16 877 - 1011 superfamily 253417
RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and... - 84.685 5.87E-17 376 - 989 multi-dom 227438

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45697 PHATRDRAFT_45697 264007 198055 Not available Not available AT1G17760.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005622 GO:0006396 GO:0005215 GO:0006810 GO:0016020 -

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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