2137 JmjC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2137 chr_2 JmjC 273032 275838 - JmjC

Synonyms

NCBI ID Ensembl Genomes exon ID
7442211 Thaps2137.5, Thaps2137.2, Thaps2137.4, Thaps2137.3, Thaps2137.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0325

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0079
 0.38

Most Highly Correlated Transcripts

4047

hypothetical protein
0.9014

8762

SNF2_N
0.8707

262616

(MYB22)
0.8488

33033

YSH1
0.8486

268194

(Tp_Myb4R1b) SANT
0.8449

264090

AAA_12
0.8401

263599

COG3899
0.8317

263610

COG3899
0.8302

10533

hypothetical protein
0.8291

4071

hypothetical protein
0.8176

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
JmjC superfamily JmjC domain, hydroxylase; The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins... - 133.96 1.82E-36 375 - 493 superfamily 202224
JmjC superfamily JmjC domain, hydroxylase; The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins... - 133.96 1.82E-36 375 - 493 superfamily 202224
JmjN Small domain found in the jumonji family of transcription factors; To date, this domain always co-... cl15840 76.1474 7.21E-17 81 - 121 specific 128818
JmjN superfamily jmjN domain; jmjN domain. - 76.1474 7.21E-17 81 - 121 superfamily 210240
zf-C5HC2 superfamily C5HC2 zinc finger; Predicted zinc finger with eight potential zinc ligand binding residues. This... - 60.3566 2.54E-11 596 - 647 superfamily 251625
zf-C5HC2 superfamily C5HC2 zinc finger; Predicted zinc finger with eight potential zinc ligand binding residues. This... - 60.3566 2.54E-11 596 - 647 superfamily 251625

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48747 PHATRDRAFT_48747 211284 259682 433479 Not available AT4G20400.1 397432

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005634 -

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

Add comment

Log in to post comments