21397 Nop52 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21397 chr_2 Nop52 superfamily 1615439 1617783 - Nop52 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7446683 Thaps21397.3, Thaps21397.1, Thaps21397.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0221

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0110
 0.24

Most Highly Correlated Transcripts

22672

hypothetical protein
0.9646

40341

WD40 superfamily
0.953

23336

SRP40_C superfamily
0.946

37327

tRNA_Me_trans
0.941

29018

NMD3
0.9395

268688

hypothetical protein
0.9344

40223

PLN02347
0.9335

34413

RRM_ABT1_like
0.9334

1374

RRM
0.9329

39022

COG2319
0.9315

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Nop52 superfamily Nucleolar protein,Nop52; Nop52 believed to be involved in the generation of 28S rRNA. - 150.081 1.79E-41 96 - 407 superfamily 253502

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44394 PHATRDRAFT_44394 243513 319753 Not available Not available AT5G20600.1 552619

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006364 GO:0030688 -

GO:0006364

rRNA processing

Details: 
Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
GO Category: 
BP

GO:0030688

preribosome, small subunit precursor

Details: 
A preribosomal complex consisting of 20S pre-rRNA, ribosomal proteins including late-associating small subunit proteins, and associated proteins; a precursor of the eukaryotic cytoplasmic small ribosomal subunit.
GO Category: 
CC

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