21839 Symplekin_CThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21839	chr_3	Symplekin_C	1379386	1383987	+	Symplekin_C

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451275	Thaps21839.5, Thaps21839.1, Thaps21839.2, Thaps21839.4, Thaps21839.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0415

Most Highly Correlated Transcripts

25270 hypothetical protein 0.9232	261324 PLN02724 0.9164	25142 SWIRM 0.9059	39741 (APM3) AP-3_Mu3_Cterm 0.9046	23602 hypothetical protein 0.9042	269821 S_TKc 0.904
268550 (ALD1) ALDH-SF superfamily 0.9028	15114 Zinc_peptidase_like superfamily 0.9	9503 PTZ00121 0.8998	22620 (Tp_AP2-EREBP1) regulator [Rayko] 0.8993

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Symplekin_C superfamily		Symplekin tight junction protein C terminal; This domain family is found in eukaryotes, and is...	-	189.761	1.61E-54	1205 - 1409	superfamily	256960
Symplekin_C superfamily		Symplekin tight junction protein C terminal; This domain family is found in eukaryotes, and is...	-	189.761	1.61E-54	1205 - 1409	superfamily	256960

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_43779	PHATRDRAFT_43779	269346	287625	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
mRNA surveillance pathway	map03015

GO Terms

Not available -

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