22323 SRP19
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
22323 chr_4 SRP19 1401907 1402711 + SRP19
NCBI ID Ensembl Genomes exon ID
7448822 Thaps22323.2, Thaps22323.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0295
SAICAR_synt_Sc
0.9162
IF4E
0.8816
hypothetical protein
0.8796
PTZ00368
0.8788
2-Hacid_dh_1
0.8776
hypothetical protein
0.8725
TRX_reduct
0.8701
PTZ00150
0.8668
KPHMT-like
0.8665
cysE
0.8659
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SRP19 SRP19 protein; The signal recognition particle (SRP) binds to the signal peptide of proteins as... cl00617 83.3551 1.38E-20 67 - 195 specific 250969
SRP19 superfamily SRP19 protein; The signal recognition particle (SRP) binds to the signal peptide of proteins as... - 83.3551 1.38E-20 67 - 195 superfamily 260536
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44439 PHATRDRAFT_44439 247258 158974 Not available Not available Not available Not available
KEGG description KEGG Pathway
Protein export map03060
GO:0003723 GO:0005786 GO:0006605 GO:0008312 -

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

signal recognition particle, endoplasmic reticulum targeting

Details: 
A ribonucleoprotein particle of 325 kDa composed of a 7S (300 nucleotide) RNA molecule and a complex of six different polypeptides. This binds both to the N-terminal signal peptide for proteins destined for the endoplasmic reticulum as they emerge from the large ribosomal subunit and also to the ribosome. This binding arrests further translation thereby preventing the proteins from being released into the cytosol. The SRP-ribosome complex then diffuses to the endoplasmic reticulum where it is bound to the signal recognition particle receptor, which allows resumption of protein synthesis and facilitates the passage of the growing polypeptide chain through the translocon. Through a process involving GTP hydrolysis, the SRP-SRP receptor complex dissociates and SRP returns to the cytosol. Of the six polypeptides of SRP the 54 kDa subunit (SRP54) is the central player. It contains an N-terminal GTPase domain and a C-terminal domain that binds directly to the signal peptide and the SRP RNA. Examples of this component are found in Mus musculus, Saccharomyces cerevisiae and Arabidopsis thaliana.
GO Category: 
CC

protein targeting

Details: 
The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif.
GO Category: 
BP

7S RNA binding

Details: 
Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP).
GO Category: 
MF
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