22570 (Tp_HSF_3.7d) HSF_DNA-bind
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22570 chr_5 (Tp_HSF_3.7d) HSF_DNA-bind 300788 302353 + HSF_DNA-bind

Synonyms

NCBI ID Ensembl Genomes exon ID
7449654 Thaps22570.1, Thaps22570.2, Thaps22570.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0411

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9406

9353

(Tp_HSF_1c) HSF_DNA-bind superfamily
0.8394

34541

MgtA
0.8094

23916

hypothetical protein
0.8024

5802

STKc_AGC
0.7989

24396

hypothetical protein
0.7983

261181

Gly_transf_sug superfamily
0.7981

42620

WD40
0.7969

12116

(Tp_HSF_3.5b) HSF_DNA-bind superfamily
0.7966

34487

MgtA
0.7961

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HSF_DNA-bind HSF-type DNA-binding; HSF-type DNA-binding. cl12113 100.652 3.73E-26 98 - 185 specific 249865
HSF_DNA-bind superfamily HSF-type DNA-binding; HSF-type DNA-binding. - 100.652 3.73E-26 98 - 185 superfamily 264552

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 GO:0003677 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

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