42620 WD40
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
42620 chr_17 WD40 91081 92718 - WD40

Synonyms

NCBI ID Ensembl Genomes exon ID
7444169 Thaps42620.4, Thaps42620.2, Thaps42620.3, Thaps42620.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0409

Most Highly Correlated Transcripts

263599

COG3899
0.8816

263610

COG3899
0.8695

268194

(Tp_Myb4R1b) SANT
0.8646

21580

RNB
0.8614

24683

Raptor_N
0.8586

6962

hypothetical protein
0.8527

12960

Vac14_Fig4_bd
0.8508

8762

SNF2_N
0.8489

4445

hypothetical protein
0.848

23279

Tho2
0.8477

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 151.334 3.34E-42 112 - 409 superfamily 238121
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 151.334 3.34E-42 112 - 409 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 119.808 3.95E-30 33 - 409 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 465008 Cre08.g374400.t1.1 Not available 500180

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003847 -

GO:0003847

1-alkyl-2-acetylglycerophosphocholine esterase activity

Details: 
Catalysis of the reaction: 2-acetyl-1-alkyl-sn-glycero-3-phosphocholine + H2O = 1-alkyl-sn-glycero-3-phosphocholine + acetate.
GO Category: 
MF

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