22579 Sec62 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22579 chr_5 Sec62 superfamily 341611 343184 + Sec62 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7451730 Thaps22579.3, Thaps22579.1, Thaps22579.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0048

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0094
 0.37

Most Highly Correlated Transcripts

40107

(ief5) PLN03107
0.908

37539

cpn10
0.9007

21865

hypothetical protein
0.8967

9943

hypothetical protein
0.8944

17859

DER1 superfamily
0.8922

18796

UMP_CMP_kin_fam
0.8903

22547

hypothetical protein
0.8877

42457

(RS25) Ribosomal_S25
0.8828

105

PTZ00248
0.8827

5293

PRK00772
0.876

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sec62 superfamily Translocation protein Sec62; Translocation protein Sec62. - 102.183 1.06E-25 37 - 210 superfamily 261206

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47099 PHATRDRAFT_47099 208718 254577 469110 Cre02.g084050.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Protein processing in endoplasmic reticulum map04141

GO Terms

GO:0008565 GO:0015031 GO:0016021 -

GO:0008565

protein transporter activity

Details: 
Enables the directed movement of proteins into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0015031

protein transport

Details: 
The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

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