22610 (RL4e) PLN00185
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
22610 chr_5 (RL4e) PLN00185 465731 469830 + PLN00185
NCBI ID Ensembl Genomes exon ID
7449695 Thaps22610.1, Thaps22610.2
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0049
Normalized Mean Residue
Thaps_bicluster_0139
0.40
(bd672) NA
0.8666
(bd258) HU
0.8582
Ribosomal_P0_L10e
0.8485
(bd1766) NA
0.8459
(bd1765) NA
0.8431
(RL27A) Ribosomal_L18e superfamily
0.8187
(bd719) NA
0.813
Ribosomal_L7Ae superfamily
0.8115
(bd624) Glyco_transf_34 superfamily
0.8071
PRK00772
0.8033
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ribosomal_L4 superfamily Ribosomal protein L4/L1 family; This family includes Ribosomal L4/L1 from eukaryotes and... - 236.657 1.50E-75 7 - 263 superfamily 260356
Ribos_L4_asso_C superfamily 60S ribosomal protein L4 C-terminal domain; This family is found at the very C-terminal of 60... - 105.769 3.61E-28 266 - 341 superfamily 258544
Ribos_L4_asso_C superfamily 60S ribosomal protein L4 C-terminal domain; This family is found at the very C-terminal of 60... - 105.769 3.61E-28 266 - 341 superfamily 258544
PLN00185 60S ribosomal protein L4-1; Provisional - 604.103 0 1 - 361 multi-dom 177779
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd977 PHATRDRAFT_bd977 269355 293930 453373 Cre09.g397697.t1.1 AT3G09630.2 353589
KEGG description KEGG Pathway
Ribosome map03010
GO:0003735 GO:0005622 GO:0005840 GO:0006412 -

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP
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