22864 (SDH) GcvT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22864 chr_5 (SDH) GcvT 1807061 1810314 + GcvT

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0424

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0249
 0.31

Most Highly Correlated Transcripts

bd1941

(bd1941) NA
0.9546

bd410

(bd410) HNHc
0.9538

bd415

(bd415) arom_aa_hydroxylase superfamily
0.9372

28651

(AAT1_1) PLN02644
0.9137

bd1841

(bd1841) CAP10 superfamily
0.9056

262515

CLN3 superfamily
0.9053

3260

hypothetical protein
0.9026

25495

ALDH_F6_MMSDH
0.9006

24460

hypothetical protein
0.8988

bd1808

(bd1808) NA
0.8977

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GCV_T Aminomethyltransferase folate-binding domain; This is a family of glycine cleavage T-proteins, part... cl01893 225.238 1.27E-67 610 - 822 specific 250713
GCV_T superfamily Aminomethyltransferase folate-binding domain; This is a family of glycine cleavage T-proteins, part... - 225.238 1.27E-67 610 - 822 superfamily 261109
NAD_binding_8 superfamily NAD(P)-binding Rossmann-like domain; NAD(P)-binding Rossmann-like domain. - 117.08 2.72E-28 139 - 494 superfamily 267487
GCV_T_C superfamily Glycine cleavage T-protein C-terminal barrel domain; This is a family of glycine cleavage T-... - 64.9305 2.02E-12 830 - 931 superfamily 254962
GCV_T_C superfamily Glycine cleavage T-protein C-terminal barrel domain; This is a family of glycine cleavage T-... - 64.9305 2.02E-12 830 - 931 superfamily 254962
GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] - 312.263 4.64E-97 544 - 945 multi-dom 223481
DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] - 201.281 5.58E-57 131 - 513 multi-dom 223737

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_46384 PHATRDRAFT_46384 Not available 294598 455971 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006118 GO:0016491 GO:0004047 GO:0005737 GO:0006546 GO:0008480 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0004047

aminomethyltransferase activity

Details: 
Catalysis of the reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0006546

glycine catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of glycine, aminoethanoic acid.
GO Category: 
BP

GO:0008480

sarcosine dehydrogenase activity

Details: 
Catalysis of the reaction: sarcosine + H2O + electron-transfer flavoprotein = glycine + formaldehyde + reduced electron-transfer flavoprotein.
GO Category: 
MF

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