22976 PLN03199
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22976 chr_6 PLN03199 302694 304377 - PLN03199

Synonyms

NCBI ID Ensembl Genomes exon ID
7451130 Thaps22976.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0281

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0032
 0.47

Most Highly Correlated Transcripts

16295

FBPase
0.8779

bd1944

(bd1944) Glyco_hydro_79n superfamily
0.8772

12899

AAA
0.8621

13448

Sec1
0.846

264556

FBPase
0.8418

5605

RbsK
0.8265

bd176

(bd176) PP2Cc
0.8236

bd1662

(bd1662) TIGR00367
0.8188

21590

hypothetical protein
0.8136

780

Glf
0.8135

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes:... cl00615 187.464 4.75E-56 182 - 453 specific 239583
Membrane-FADS-like superfamily The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane... - 187.464 4.75E-56 182 - 453 superfamily 260534
Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain; This family includes heme binding domains from a... cl02041 84.9423 3.47E-20 37 - 110 specific 249651
Cyt-b5 superfamily Cytochrome b5-like Heme/Steroid binding domain; This family includes heme binding domains from a... - 84.9423 3.47E-20 37 - 110 superfamily 261158
PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional - 200.649 7.91E-58 17 - 475 multi-dom 178740

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 188378 247217 72565 Not available AT2G46210.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016491 GO:0006636 GO:0016020 GO:0016717 GO:0016213 -

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0006636

unsaturated fatty acid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of an unsaturated fatty acid, any fatty acid containing one or more double bonds between carbon atoms.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0016717

oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced to two molecules of water.
GO Category: 
MF

GO:0016213

linoleoyl-CoA desaturase activity

Details: 
Catalysis of the reaction: linoleoyl-CoA + reduced acceptor + O2 = gamma-linolenoyl-CoA + acceptor + 2 H2O.
GO Category: 
MF

Add comment

Log in to post comments