23738 COG3899Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23738	chr_8	COG3899	463203	469770	+	COG3899

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450149	Thaps23738.6, Thaps23738.1, Thaps23738.8, Thaps23738.7, Thaps23738.3, Thaps23738.2, Thaps23738.5, Thaps23738.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0267

Most Highly Correlated Transcripts

267979 HCO3_cotransp superfamily 0.9137	22627 hypothetical protein 0.9005	268443 SAICAR_synt_Sc 0.8814	5332 hypothetical protein 0.8813	20930 DRE_TIM_metallolyase superfamily 0.8773	31259 HA 0.8764
270120 Uup 0.8744	268136 COG1054 0.8731	20825 hypothetical protein 0.8698	25247 Nudix_Hydrolase superfamily 0.8692

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_16		AAA ATPase domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	cl18944	85.9773	1.22E-18	1012 - 1212	specific	257559
AAA superfamily		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	-	85.9773	1.22E-18	1012 - 1212	superfamily	267297
COG3899		Predicted ATPase [General function prediction only]	-	269.653	6.22E-75	1013 - 1786	multi-dom	226415

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_38958	PHATRDRAFT_38958	272085	304170	457398	Cre16.g657700.t1.1	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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