24123 fumC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24123 chr_10 fumC 240208 241965 + fumC

Synonyms

NCBI ID Ensembl Genomes exon ID
7451054 Thaps24123.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0221

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0234
 0.27

Most Highly Correlated Transcripts

3944

COG0218
0.9287

33670

RNRR2
0.9281

39845

(DNA_TopoIV) PRK05560
0.9148

21050

Ras_like_GTPase superfamily
0.9141

bd1828

(bd1828) NA
0.9116

8541

PRK00142
0.9091

24038

hypothetical protein
0.9065

24217

hypothetical protein
0.9029

264345

SpoU
0.9028

25473

SpoU_methylase
0.9018

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Fumarase_classII Class II fumarases; This subgroup contains Escherichia coli fumarase C, human mitochondrial... cl00013 841.392 0 46 - 505 specific 176465
Lyase_I_like superfamily Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and... - 841.392 0 46 - 505 superfamily 260138
fumC fumarate hydratase; Reviewed - 880.58 0 46 - 510 multi-dom 234779

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_36139 PHATRDRAFT_36139 177361 190614 422534 Cre01.g020223.t1.1 AT5G50950.3 564447

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0003824 GO:0004333 GO:0006106 GO:0045239 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0004333

fumarate hydratase activity

Details: 
Catalysis of the reaction: (S)-malate = fumarate + H(2)O.
GO Category: 
MF

GO:0006106

fumarate metabolic process

Details: 
The chemical reactions and pathways involving fumarate, the anion of trans-1,2-ethenedicarboxylic acid, the diastereoisomer of maleate. It is a key intermediate in metabolism and is formed in the TCA cycle from succinate and converted into malate.
GO Category: 
BP

GO:0045239

tricarboxylic acid cycle enzyme complex

Details: 
Any of the heteromeric enzymes that act in the TCA cycle.
GO Category: 
CC

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