24369 (Tp_CCCH1) RRM_SF superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24369 chr_11a (Tp_CCCH1) RRM_SF superfamily 632607 634134 - RRM_SF superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7444478 Thaps24369.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0220

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0101
 0.32

Most Highly Correlated Transcripts

bd1667

(bd1667) Mpp10
0.9462

268596

CBF
0.9141

6835

DUF947
0.9129

40223

PLN02347
0.9119

268145

PLN00040
0.9116

38006

FKBP_C
0.9109

262775

RBFA
0.9102

23354

RNA-binding protein of the pumilio family
0.9094

34413

RRM_ABT1_like
0.9084

22099

hypothetical protein
0.9082

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 71.5534 1.79E-15 341 - 412 superfamily 266524

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd1493 PHATRDRAFT_bd1493 140214 255521 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 GO:0005215 GO:0006810 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

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