24647 Tryp_SPcThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
24647	chr_13	Tryp_SPc	422140	423736	+	Tryp_SPc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445752	Thaps24647.1, Thaps24647.2, Thaps24647.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0097

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0016	0.55	11 12

Most Highly Correlated Transcripts

bd950 (bd950) NA 0.9256	bd1983 (bd1983) RecA-like_NTPases superfamily 0.9223	bd439 (bd439) POLBc_alpha 0.92	bd1173 (bd1173) S_TKc 0.915	bd1081 (bd1081) NA 0.9096	bd1214 (bd1214) KISc_C_terminal 0.8956
bd856 (bd856) NA 0.8956	bd622 (bd622) NA 0.8619	bd843 (bd843) NA 0.8615	9434 Tryp_SPc 0.8541

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Tryp_SPc superfamily		Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are...	-	181.706	7.03E-54	105 - 346	superfamily	238113
Tryp_SPc superfamily		Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are...	-	181.706	7.03E-54	105 - 346	superfamily	238113
Tryp_SPc		Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are...	-	178.64	7.78E-53	105 - 343	multi-dom	214473

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004295 GO:0006508 GO:0004263 -

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