24736 EHD
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24736 chr_13 EHD 967235 969180 + EHD

Synonyms

NCBI ID Ensembl Genomes exon ID
7450528 Thaps24736.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0175

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0014
 0.46

Most Highly Correlated Transcripts

269322

(atpA) PRK09281
0.9087

3582

Rab6
0.9074

36481

UAA
0.9048

41256

PRK09280
0.9048

4192

hypothetical protein
0.8979

260829

GalK
0.897

268078

MFS_1
0.8953

264177

P4Hc
0.8947

25025

PHear_NECAP
0.8927

21129

UBCc
0.891

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
EHD Eps15 homology domain (EHD), C-terminal domain; Dynamin-like C-terminal Eps15 homology domain (EHD... cl17170 415.904 5.04E-143 68 - 307 specific 206740
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 415.904 5.04E-143 68 - 307 superfamily 266525
EH superfamily Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal... - 69.9411 7.17E-15 474 - 531 superfamily 238009
EH superfamily Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal... - 69.9411 7.17E-15 474 - 531 superfamily 238009
EH Eps15 homology domain; Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF)... - 90.0291 1.20E-21 453 - 554 multi-dom 197477

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_30394 PHATRDRAFT_30394 226667 319388 443014 Cre06.g260950.t1.2 AT4G05520.2 529936

KEGG

KEGG description KEGG Pathway
Endocytosis map04144

GO Terms

GO:0005509 GO:0004799 GO:0050757 -

GO:0005509

calcium ion binding

Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).
GO Category: 
MF

GO:0004799

thymidylate synthase activity

Details: 
Catalysis of the reaction: 5,10-methylenetetrahydrofolate + dUMP = 7,8-dihydrofolate + thymidylate.
GO Category: 
MF

GO:0050757

thymidylate synthase biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of the enzyme thymidylate synthase, which catalyzes the reaction: 5,10-methylenetetrahydrofolate + dUMP = dihydrofolate + dTMP.
GO Category: 
BP

Add comment

Log in to post comments