21129 UBCcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21129	chr_2	UBCc	277410	278745	-	UBCc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442212	Thaps21129.1, Thaps21129.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0217

Most Highly Correlated Transcripts

39299 (ARF3) Arf1_5_like 0.9175	36037 Trypsin_2 0.9142	260829 GalK 0.9119	37934 GRX_PICOT_like 0.9118	22673 NA 0.9031	3341 hypothetical protein 0.9024
21249 hypothetical protein 0.8967	264177 P4Hc 0.8964	2543 hypothetical protein 0.8961	18462 EMP24_GP25L 0.895

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
UBCc		Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated...	cl00154	142.726	1.18E-42	79 - 212	specific	238117
UBCc superfamily		Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated...	-	142.726	1.18E-42	79 - 212	superfamily	260221

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_48810	PHATRDRAFT_48810	182557	307135	416101	Cre08.g370850.t1.1	AT4G36800.2	353725

KEGG

KEGG description	KEGG Pathway
Ubiquitin mediated proteolysis	map04120

GO Terms

GO:0004840 GO:0006464 GO:0006512 GO:0004842 -

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