24849 (Tp_CCCH8) DnaQ_like_exo superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24849 chr_14 (Tp_CCCH8) DnaQ_like_exo superfamily 490310 492213 + DnaQ_like_exo superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7452678 Thaps24849.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0220

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0199
 0.24

Most Highly Correlated Transcripts

42594

Ribosomal_P0_like
0.948

23354

RNA-binding protein of the pumilio family
0.9422

20985

COG5593
0.938

29018

NMD3
0.9363

268735

(GPB1) WD40
0.9353

2772

Utp14
0.9339

36434

DUF1253
0.9323

22582

S1
0.9317

32374

TPR
0.9315

268145

PLN00040
0.9287

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DnaQ_like_exo superfamily DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; The DnaQ-like... - 152.64 1.97E-43 319 - 470 superfamily 263941

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_44042 PHATR_44042 179299 63027 Not available Cre01.g036600.t1.2 AT5G67240.1 534662

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 GO:0004527 GO:0005622 GO:0004518 GO:0016788 GO:0042578 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0004527

exonuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0004518

nuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids.
GO Category: 
MF

GO:0016788

hydrolase activity, acting on ester bonds

Details: 
Catalysis of the hydrolysis of any ester bond.
GO Category: 
MF

GO:0042578

phosphoric ester hydrolase activity

Details: 
Catalysis of the reaction: RPO-R' + H2O = RPOOH + R'H. This reaction is the hydrolysis of any phosphoric ester bond, any ester formed from orthophosphoric acid, O=P(OH)3.
GO Category: 
MF

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