3858 PTZ00141
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3858 chr_3 PTZ00141 1974629 1976121 - PTZ00141

Synonyms

NCBI ID Ensembl Genomes exon ID
7445368 Thaps3858.2, Thaps3858.1, Thaps3858.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0188
 0.22

Most Highly Correlated Transcripts

25473

SpoU_methylase
0.9319

263350

(RPC25) RPB7
0.9306

5666

Las1 superfamily
0.9298

8541

PRK00142
0.9268

21959

hypothetical protein
0.9171

42821

PRK14333
0.9138

23679

Diphthamide_syn superfamily
0.908

34021

Methyltrn_RNA_3
0.9072

25434

PRK00142
0.9022

34176

AdoMet_MTases superfamily
0.9019

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
EF1_alpha Elongation Factor 1-alpha (EF1-alpha) protein family; EF1 is responsible for the GTP-dependent... cl17170 407.262 6.70E-142 9 - 222 specific 206670
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 407.262 6.70E-142 9 - 222 superfamily 266525
EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent... cl02786 189.327 1.43E-58 321 - 421 specific 239676
Translation_factor_III superfamily Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G... - 189.327 1.43E-58 321 - 421 superfamily 261448
EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is... cl02787 157.714 8.50E-47 225 - 314 specific 239664
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 157.714 8.50E-47 225 - 314 superfamily 261449
PTZ00141 elongation factor 1- alpha; Provisional - 803.196 0 1 - 436 multi-dom 185474

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 250437 321099 Not available Not available Not available 354065

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0005525 GO:0006412 GO:0003746 GO:0005737 GO:0006414 GO:0003924 GO:0008547 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0003746

translation elongation factor activity

Details: 
Functions in chain elongation during polypeptide synthesis at the ribosome.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0006414

translational elongation

Details: 
The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
GO Category: 
BP

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0008547

NA

Details: 
NA
GO Category: 
NA

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