25675 LRR_RI superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25675	chr_20	LRR_RI superfamily	718255	719618	-	LRR_RI superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443640	Thaps25675.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0389

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0031	0.36	0.00007 15000

Most Highly Correlated Transcripts

21613 hypothetical protein 0.887	263695 Peroxin-3 superfamily 0.8665	11609 hypothetical protein 0.8574	22953 hypothetical protein 0.8429	10661 hypothetical protein 0.8406	263610 COG3899 0.8374
23511 hypothetical protein 0.8363	263599 COG3899 0.8328	25531 hypothetical protein 0.8314	25802 hypothetical protein 0.8302

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
LRR_RI superfamily		Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue...	-	81.6329	7.18E-18	53 - 200	superfamily	238064

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Cre06.g285900.t1.1	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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